base-files: fix sysupgrade -b/-l when -c is used
Since /overlay/upper appeared, -b ignored -c silently (cause it was still checking for /overlay/etc). Now, if /overlay/upper is absent, sysupgrade -c will fail and exit verbosely. Fix -l to consider -c (it never did). Clean up to always use /overlay/upper/xxx instead of still checking for /overlay/xxx. Signed-off-by: Luiz Angelo Daros de Luca <luizluca@gmail.com>v19.07.3_mercusys_ac12_duma
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